J3_4V9A_047

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V9A|1|BA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9A_047 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0787

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V9A|1|BA|C|297
4V9A|1|BA|G|298
4V9A|1|BA|A|299
4V9A|1|BA|A|300
4V9A|1|BA|G|301
*
4V9A|1|BA|C|316
4V9A|1|BA|G|317
4V9A|1|BA|C|318
4V9A|1|BA|C|319
4V9A|1|BA|A|320
4V9A|1|BA|G|321
4V9A|1|BA|A|322
4V9A|1|BA|G|323
4V9A|1|BA|A|324
4V9A|1|BA|G|325
*
4V9A|1|BA|C|337
4V9A|1|BA|G|338
4V9A|1|BA|U|339
4V9A|1|BA|A|340
4V9A|1|BA|G|341

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24