J3_4V9A_065

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

4V9A|1|DA|U|271|||C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9A_065 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.1307

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V9A|1|DA|U|269
4V9A|1|DA|A|270
4V9A|1|DA|A|270|||A
4V9A|1|DA|A|270|||B
4V9A|1|DA|C|270|||C
*
4V9A|1|DA|G|270|||W
4V9A|1|DA|G|270|||X
4V9A|1|DA|G|270|||Y
4V9A|1|DA|U|270|||Z
4V9A|1|DA|C|271|||A
4V9A|1|DA|G|271|||B
4V9A|1|DA|U|271|||C
4V9A|1|DA|G|271
*
4V9A|1|DA|C|366
4V9A|1|DA|G|370

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DK

50S ribosomal protein L9

Chain DZ

50S ribosomal protein L28