J3_4V9B_019

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V9B|1|CA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9B_019 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1124

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

4V9B|1|CA|C|826
4V9B|1|CA|U|827
4V9B|1|CA|A|828
4V9B|1|CA|G|829
*
4V9B|1|CA|C|857
4V9B|1|CA|G|858
4V9B|1|CA|A|859
4V9B|1|CA|A|860
4V9B|1|CA|G|861
*
4V9B|1|CA|C|868
4V9B|1|CA|G|869
4V9B|1|CA|U|870
4V9B|1|CA|U|871
4V9B|1|CA|A|872
4V9B|1|CA|A|873
4V9B|1|CA|G|874

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CE

30S RIBOSOMAL PROTEIN S2

Chain CK

30S RIBOSOMAL PROTEIN S8