J3_4V9C_027

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4V9C|1|DA|U|686, 4V9C|1|DA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9C_027 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3219

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V9C|1|DA|U|683
4V9C|1|DA|G|684
4V9C|1|DA|A|685
4V9C|1|DA|U|686
4V9C|1|DA|C|687
4V9C|1|DA|U|688
4V9C|1|DA|A|689
*
4V9C|1|DA|U|773
4V9C|1|DA|G|774
4V9C|1|DA|G|775
*
4V9C|1|DA|C|791
4V9C|1|DA|A|792
4V9C|1|DA|A|793
4V9C|1|DA|A|794

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DC

50S ribosomal protein L2