J3_4V9C_069

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V9C|1|DA|A|504, 4V9C|1|DA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9C_069 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0982

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V9C|1|DA|G|30
4V9C|1|DA|C|31
*
4V9C|1|DA|G|474
4V9C|1|DA|C|475
4V9C|1|DA|G|476
4V9C|1|DA|A|477
4V9C|1|DA|A|478
4V9C|1|DA|A|479
4V9C|1|DA|A|480
4V9C|1|DA|G|481
4V9C|1|DA|A|482
4V9C|1|DA|A|483
4V9C|1|DA|C|484
*
4V9C|1|DA|G|496
4V9C|1|DA|A|497
4V9C|1|DA|G|498
4V9C|1|DA|U|499
4V9C|1|DA|G|500
4V9C|1|DA|A|501
4V9C|1|DA|A|502
4V9C|1|DA|A|503
4V9C|1|DA|A|504
4V9C|1|DA|A|505
4V9C|1|DA|G|506
4V9C|1|DA|A|507
4V9C|1|DA|A|508
4V9C|1|DA|C|509
4V9C|1|DA|C|510

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DQ

50S ribosomal protein L20

Chain DS

50S ribosomal protein L22

Chain DU

50S ribosomal protein L24