3D structure

PDB id
4V9I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V9I_002 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0794
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

4V9I|1|AA|C|936
4V9I|1|AA|A|937
4V9I|1|AA|A|938
4V9I|1|AA|G|939
*
4V9I|1|AA|C|1344
4V9I|1|AA|U|1345
4V9I|1|AA|A|1346
4V9I|1|AA|G|1347
4V9I|1|AA|U|1348
4V9I|1|AA|A|1349
4V9I|1|AA|A|1350
*
4V9I|1|AA|U|1372
4V9I|1|AA|G|1373
4V9I|1|AA|A|1374
4V9I|1|AA|A|1375
4V9I|1|AA|U|1376
4V9I|1|AA|A|1377
4V9I|1|AA|C|1378
4V9I|1|AA|G|1379

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AG
30S Ribosomal protein S7
Chain AI
30S Ribosomal protein S9
Chain AW
Transfer RNA; tRNA

Coloring options:


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