J3_4V9I_019
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUACC*GGGCGA
- Length
- 27 nucleotides
- Bulged bases
- 4V9I|1|CA|A|953, 4V9I|1|CA|G|954, 4V9I|1|CA|A|956
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9I_019 not in the Motif Atlas
- Geometric match to J3_6CZR_062
- Geometric discrepancy: 0.1469
- The information below is about J3_6CZR_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59791.1
- Basepair signature
- cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V9I|1|CA|U|933
4V9I|1|CA|U|934
4V9I|1|CA|U|935
4V9I|1|CA|A|936
4V9I|1|CA|A|937
4V9I|1|CA|U|938
4V9I|1|CA|U|939
4V9I|1|CA|C|940
*
4V9I|1|CA|G|951
4V9I|1|CA|A|952
4V9I|1|CA|A|953
4V9I|1|CA|G|954
4V9I|1|CA|A|955
4V9I|1|CA|A|956
4V9I|1|CA|C|957
4V9I|1|CA|C|958
4V9I|1|CA|U|959
4V9I|1|CA|U|960
4V9I|1|CA|A|961
4V9I|1|CA|C|962
4V9I|1|CA|C|963
*
4V9I|1|CA|G|1202
4V9I|1|CA|G|1203
4V9I|1|CA|G|1204
4V9I|1|CA|C|1205
4V9I|1|CA|G|1206
4V9I|1|CA|A|1207
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CJ
- 30S Ribosomal protein S10
- Chain CM
- 30S Ribosomal protein S13
- Chain CN
- 30S Ribosomal protein S14
- Chain CS
- 30S Ribosomal protein S19
- Chain CY
- A-SITE tRNA
Coloring options: