J3_4V9I_020

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

4V9I|1|CA|U|1194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_020 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1333

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4V9I|1|CA|C|968
4V9I|1|CA|U|969
4V9I|1|CA|U|970
4V9I|1|CA|G|971
*
4V9I|1|CA|C|1028
4V9I|1|CA|A|1029
4V9I|1|CA|G|1030
*
4V9I|1|CA|C|1192
4V9I|1|CA|U|1193
4V9I|1|CA|U|1194
4V9I|1|CA|A|1195
4V9I|1|CA|C|1196
4V9I|1|CA|G|1197

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CN

30S Ribosomal protein S14