J3_4V9I_021

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUCAG*CGCAACC*GACGACG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_021 not in the Motif Atlas

Homologous match to J3_4LFB_007

Geometric discrepancy: 0.0913

The information below is about J3_4LFB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08394.3

Basepair signature

cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V9I|1|CA|C|1046
4V9I|1|CA|G|1047
4V9I|1|CA|U|1048
4V9I|1|CA|C|1049
4V9I|1|CA|A|1050
4V9I|1|CA|G|1051
*
4V9I|1|CA|C|1090
4V9I|1|CA|G|1091
4V9I|1|CA|C|1092
4V9I|1|CA|A|1093
4V9I|1|CA|A|1094
4V9I|1|CA|C|1095
4V9I|1|CA|C|1096
*
4V9I|1|CA|G|1169
4V9I|1|CA|A|1170
4V9I|1|CA|C|1171
4V9I|1|CA|G|1172
4V9I|1|CA|A|1173
4V9I|1|CA|C|1174
4V9I|1|CA|G|1175

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CB

30S Ribosomal protein S2

Chain CC

30S Ribosomal protein S3

Chain CE

30S Ribosomal protein S5

Chain CI

30S Ribosomal protein S9

Chain CJ

30S Ribosomal protein S10

Chain CN

30S Ribosomal protein S14