J3_4V9I_021
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9I_021 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.0913
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V9I|1|CA|C|1046
4V9I|1|CA|G|1047
4V9I|1|CA|U|1048
4V9I|1|CA|C|1049
4V9I|1|CA|A|1050
4V9I|1|CA|G|1051
*
4V9I|1|CA|C|1090
4V9I|1|CA|G|1091
4V9I|1|CA|C|1092
4V9I|1|CA|A|1093
4V9I|1|CA|A|1094
4V9I|1|CA|C|1095
4V9I|1|CA|C|1096
*
4V9I|1|CA|G|1169
4V9I|1|CA|A|1170
4V9I|1|CA|C|1171
4V9I|1|CA|G|1172
4V9I|1|CA|A|1173
4V9I|1|CA|C|1174
4V9I|1|CA|G|1175
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CB
- 30S Ribosomal protein S2
- Chain CC
- 30S Ribosomal protein S3
- Chain CE
- 30S Ribosomal protein S5
- Chain CI
- 30S Ribosomal protein S9
- Chain CJ
- 30S Ribosomal protein S10
- Chain CN
- 30S Ribosomal protein S14
Coloring options: