3D structure

PDB id
4V9I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CGUCAG*CGCAACC*GACGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V9I_021 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.0913
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

4V9I|1|CA|C|1046
4V9I|1|CA|G|1047
4V9I|1|CA|U|1048
4V9I|1|CA|C|1049
4V9I|1|CA|A|1050
4V9I|1|CA|G|1051
*
4V9I|1|CA|C|1090
4V9I|1|CA|G|1091
4V9I|1|CA|C|1092
4V9I|1|CA|A|1093
4V9I|1|CA|A|1094
4V9I|1|CA|C|1095
4V9I|1|CA|C|1096
*
4V9I|1|CA|G|1169
4V9I|1|CA|A|1170
4V9I|1|CA|C|1171
4V9I|1|CA|G|1172
4V9I|1|CA|A|1173
4V9I|1|CA|C|1174
4V9I|1|CA|G|1175

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CB
30S Ribosomal protein S2
Chain CC
30S Ribosomal protein S3
Chain CE
30S Ribosomal protein S5
Chain CI
30S Ribosomal protein S9
Chain CJ
30S Ribosomal protein S10
Chain CN
30S Ribosomal protein S14

Coloring options:


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