J3_4V9I_022
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 4V9I|1|CA|A|1165
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9I_022 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.1115
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V9I|1|CA|C|1099
4V9I|1|CA|G|1100
4V9I|1|CA|C|1101
*
4V9I|1|CA|G|1138
4V9I|1|CA|G|1139
4V9I|1|CA|A|1140
4V9I|1|CA|C|1141
4V9I|1|CA|U|1142
4V9I|1|CA|G|1143
4V9I|1|CA|C|1144
*
4V9I|1|CA|G|1157
4V9I|1|CA|A|1158
4V9I|1|CA|G|1159
4V9I|1|CA|G|1160
4V9I|1|CA|A|1161
4V9I|1|CA|A|1162
4V9I|1|CA|G|1163
4V9I|1|CA|G|1164
4V9I|1|CA|A|1165
4V9I|1|CA|G|1166
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CB
- 30S Ribosomal protein S2
- Chain CG
- 30S Ribosomal protein S7
- Chain CI
- 30S Ribosomal protein S9
- Chain CJ
- 30S Ribosomal protein S10
- Chain CN
- 30S Ribosomal protein S14
Coloring options: