J3_4V9I_028

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_028 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0852

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V9I|1|DA|U|2112
4V9I|1|DA|U|2113
4V9I|1|DA|G|2114
*
4V9I|1|DA|C|2217
4V9I|1|DA|U|2218
4V9I|1|DA|A|2219
4V9I|1|DA|A|2220
4V9I|1|DA|C|2221
*
4V9I|1|DA|G|2234
4V9I|1|DA|G|2235
4V9I|1|DA|A|2236
4V9I|1|DA|C|2237
4V9I|1|DA|A|2238
4V9I|1|DA|G|2239

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DD

50S ribosomal protein L2

Chain DI

50S ribosomal protein L9