J3_4V9I_029
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUC*GAG*UAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 4V9I|1|DA|G|2345
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9I_029 not in the Motif Atlas
- Homologous match to J3_7RQB_011
- Geometric discrepancy: 0.0786
- The information below is about J3_7RQB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.4
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V9I|1|DA|C|2306
4V9I|1|DA|U|2307
4V9I|1|DA|C|2308
*
4V9I|1|DA|G|2332
4V9I|1|DA|A|2333
4V9I|1|DA|G|2334
*
4V9I|1|DA|U|2343
4V9I|1|DA|A|2344
4V9I|1|DA|G|2345
4V9I|1|DA|A|2346
4V9I|1|DA|A|2347
4V9I|1|DA|G|2348
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain CV
- Transfer RNA; tRNA
- Chain D0
- 50S ribosomal protein L27
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DG
- 50S ribosomal protein L5
- Chain DS
- 50S ribosomal protein L18
Coloring options: