J3_4V9I_030

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4V9I|1|DA|A|2529, 4V9I|1|DA|U|2530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_030 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0533

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

4V9I|1|DA|C|2528
4V9I|1|DA|A|2529
4V9I|1|DA|U|2530
4V9I|1|DA|C|2531
*
4V9I|1|DA|G|2556
4V9I|1|DA|U|2557
4V9I|1|DA|U|2558
*
4V9I|1|DA|A|2572
4V9I|1|DA|U|2573
4V9I|1|DA|U|2574
4V9I|1|DA|A|2575
4V9I|1|DA|A|2576
4V9I|1|DA|A|2577
4V9I|1|DA|G|2578

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DO

50S ribosomal protein L14