J3_4V9I_048

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCAUAG*CG*UCG

Length

11 nucleotides

Bulged bases

4V9I|1|BB|U|14, 4V9I|1|BB|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_048 not in the Motif Atlas

Homologous match to J3_9DFE_020

Geometric discrepancy: 0.1867

The information below is about J3_9DFE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12003.2

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4V9I|1|BB|C|11
4V9I|1|BB|C|12
4V9I|1|BB|A|13
4V9I|1|BB|U|14
4V9I|1|BB|A|15
4V9I|1|BB|G|16
*
4V9I|1|BB|C|68
4V9I|1|BB|G|69
*
4V9I|1|BB|U|108
4V9I|1|BB|C|109
4V9I|1|BB|G|110

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BZ

50S ribosomal protein L25