J3_4V9I_050

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V9I|1|CA|C|49, 4V9I|1|CA|A|51, 4V9I|1|CA|A|52

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_050 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0862

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V9I|1|CA|G|47
4V9I|1|CA|C|48
4V9I|1|CA|C|49
4V9I|1|CA|U|50
4V9I|1|CA|A|51
4V9I|1|CA|A|52
4V9I|1|CA|G|53
*
4V9I|1|CA|U|355
4V9I|1|CA|A|356
4V9I|1|CA|G|357
4V9I|1|CA|G|358
4V9I|1|CA|A|359
4V9I|1|CA|A|360
4V9I|1|CA|U|361
4V9I|1|CA|C|362
4V9I|1|CA|U|363
*
4V9I|1|CA|A|389
4V9I|1|CA|G|390
4V9I|1|CA|C|391

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain BI

50S ribosomal protein L9

Chain CL

30S Ribosomal protein S12

Chain CP

30S Ribosomal protein S16