J3_4V9I_053
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 4V9I|1|CA|U|707
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9I_053 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.1376
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V9I|1|CA|U|656
4V9I|1|CA|G|657
*
4V9I|1|CA|C|701
4V9I|1|CA|G|702
4V9I|1|CA|C|703
4V9I|1|CA|C|704
4V9I|1|CA|G|705
4V9I|1|CA|A|706
4V9I|1|CA|U|707
4V9I|1|CA|G|708
4V9I|1|CA|G|709
*
4V9I|1|CA|C|716
4V9I|1|CA|A|717
4V9I|1|CA|G|718
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CF
- 30S Ribosomal protein S6
- Chain CK
- 30S Ribosomal protein S11
- Chain CO
- 30S Ribosomal protein S15
- Chain CR
- 30S Ribosomal protein S18
Coloring options: