J3_4V9I_058

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V9I|1|DA|U|528, 4V9I|1|DA|G|532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_058 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2213

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V9I|1|DA|G|29
4V9I|1|DA|C|30
*
4V9I|1|DA|G|499
4V9I|1|DA|U|500
4V9I|1|DA|G|501
4V9I|1|DA|A|502
4V9I|1|DA|A|503
4V9I|1|DA|A|504
4V9I|1|DA|A|505
4V9I|1|DA|G|506
4V9I|1|DA|A|507
4V9I|1|DA|A|508
4V9I|1|DA|C|509
*
4V9I|1|DA|G|520
4V9I|1|DA|A|521
4V9I|1|DA|G|522
4V9I|1|DA|U|523
4V9I|1|DA|G|524
4V9I|1|DA|A|525
4V9I|1|DA|A|526
4V9I|1|DA|A|527
4V9I|1|DA|U|528
4V9I|1|DA|A|529
4V9I|1|DA|G|530
4V9I|1|DA|A|531
4V9I|1|DA|G|532
4V9I|1|DA|C|533
4V9I|1|DA|C|534

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DU

50S ribosomal protein L20

Chain DW

50S ribosomal protein L22

Chain DY

50S ribosomal protein L24