J3_4V9I_062

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4V9I|1|DA|A|1429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_062 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.138

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

4V9I|1|DA|G|1389
4V9I|1|DA|C|1390
4V9I|1|DA|G|1391
4V9I|1|DA|G|1392
4V9I|1|DA|G|1393
4V9I|1|DA|A|1394
4V9I|1|DA|C|1395
*
4V9I|1|DA|G|1426
4V9I|1|DA|G|1427
4V9I|1|DA|C|1428
4V9I|1|DA|A|1429
4V9I|1|DA|G|1430
*
4V9I|1|DA|C|1447
4V9I|1|DA|C|1448

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DX

50S ribosomal protein L23