J3_4V9I_063

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9I_063 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0786

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V9I|1|DA|G|1469
4V9I|1|DA|G|1470
4V9I|1|DA|G|1471
4V9I|1|DA|A|1472
4V9I|1|DA|C|1473
4V9I|1|DA|G|1474
*
4V9I|1|DA|C|1610
4V9I|1|DA|C|1611
*
4V9I|1|DA|G|1614
4V9I|1|DA|A|1615
4V9I|1|DA|A|1616
4V9I|1|DA|A|1617
4V9I|1|DA|A|1618
4V9I|1|DA|G|1619
4V9I|1|DA|C|1620

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L2