J3_4V9J_001

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V9J|1|AA|U|871, 4V9J|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9J_001 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1955

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

4V9J|1|AA|C|826
4V9J|1|AA|U|827
4V9J|1|AA|A|828
4V9J|1|AA|G|829
*
4V9J|1|AA|C|857
4V9J|1|AA|G|858
4V9J|1|AA|A|859
4V9J|1|AA|A|860
4V9J|1|AA|G|861
*
4V9J|1|AA|C|868
4V9J|1|AA|G|869
4V9J|1|AA|U|870
4V9J|1|AA|U|871
4V9J|1|AA|A|872
4V9J|1|AA|A|873
4V9J|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AV

messenger RNA