J3_4V9J_024

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4V9J|1|CA|U|1240, 4V9J|1|CA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9J_024 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.2896

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V9J|1|CA|C|1237
4V9J|1|CA|A|1238
4V9J|1|CA|A|1239
4V9J|1|CA|U|1240
4V9J|1|CA|G|1241
*
4V9J|1|CA|C|1296
4V9J|1|CA|C|1297
4V9J|1|CA|C|1298
4V9J|1|CA|A|1299
4V9J|1|CA|G|1300
4V9J|1|CA|U|1301
4V9J|1|CA|U|1302
4V9J|1|CA|C|1303
*
4V9J|1|CA|G|1334
4V9J|1|CA|C|1335
4V9J|1|CA|C|1336
4V9J|1|CA|G|1337

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CM

30S ribosomal protein S13