J3_4V9K_015

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9K_015 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.1675

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V9K|1|BA|U|2091
4V9K|1|BA|U|2092
4V9K|1|BA|G|2093
*
4V9K|1|BA|C|2196
4V9K|1|BA|U|2197
4V9K|1|BA|A|2198
4V9K|1|BA|A|2199
4V9K|1|BA|C|2205
*
4V9K|1|BA|G|2219
4V9K|1|BA|G|2224
4V9K|1|BA|A|2225
4V9K|1|BA|C|2226
4V9K|1|BA|A|2227
4V9K|1|BA|G|2228

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BD

50S ribosomal protein L2