J3_4V9K_019

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V9K|1|CA|U|871, 4V9K|1|CA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9K_019 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1138

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

4V9K|1|CA|C|826
4V9K|1|CA|U|827
4V9K|1|CA|A|828
4V9K|1|CA|G|829
*
4V9K|1|CA|C|857
4V9K|1|CA|G|858
4V9K|1|CA|A|859
4V9K|1|CA|A|860
4V9K|1|CA|G|861
*
4V9K|1|CA|C|868
4V9K|1|CA|G|869
4V9K|1|CA|U|870
4V9K|1|CA|U|871
4V9K|1|CA|A|872
4V9K|1|CA|A|873
4V9K|1|CA|G|874

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CH

30S ribosomal protein S8

Chain CV

messenger RNA