J3_4V9K_040
3D structure
- PDB id
- 4V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 4V9K|1|AA|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9K_040 not in the Motif Atlas
- Homologous match to J3_4LFB_012
- Geometric discrepancy: 0.1426
- The information below is about J3_4LFB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74074.1
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V9K|1|AA|U|672
4V9K|1|AA|G|673
*
4V9K|1|AA|C|717
4V9K|1|AA|G|718
4V9K|1|AA|C|719
4V9K|1|AA|C|720
4V9K|1|AA|G|721
4V9K|1|AA|A|722
4V9K|1|AA|U|723
4V9K|1|AA|G|724
4V9K|1|AA|G|725
*
4V9K|1|AA|C|732
4V9K|1|AA|A|733
4V9K|1|AA|G|734
Current chains
- Chain AA
- ribosomal RNA 16S
Nearby chains
- Chain AF
- 30S ribosomal protein S6
- Chain AK
- 30S ribosomal protein S11
- Chain AO
- 30S ribosomal protein S15
- Chain AR
- 30S ribosomal protein S18
- Chain AV
- messenger RNA
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