J3_4V9K_049

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

4V9K|1|BA|U|271|||D

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9K_049 not in the Motif Atlas

Homologous match to J3_4WF9_022

Geometric discrepancy: 0.2164

The information below is about J3_4WF9_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V9K|1|BA|U|269
4V9K|1|BA|A|270|||A
4V9K|1|BA|A|270|||B
4V9K|1|BA|A|270|||C
4V9K|1|BA|C|270|||D
*
4V9K|1|BA|G|270|||X
4V9K|1|BA|G|270|||Y
4V9K|1|BA|G|270|||Z
4V9K|1|BA|U|271|||A
4V9K|1|BA|C|271|||B
4V9K|1|BA|G|271|||C
4V9K|1|BA|U|271|||D
4V9K|1|BA|G|271
*
4V9K|1|BA|C|366|||B
4V9K|1|BA|G|370

Current chains

Chain BA

23S ribosomal RNA

Nearby chains