J3_4V9K_060

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V9K|1|CA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9K_060 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1583

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V9K|1|CA|C|990
4V9K|1|CA|U|991
4V9K|1|CA|U|992
4V9K|1|CA|G|993
4V9K|1|CA|A|994
4V9K|1|CA|C|995
4V9K|1|CA|A|996
4V9K|1|CA|U|997
*
4V9K|1|CA|A|1044
4V9K|1|CA|C|1045
4V9K|1|CA|A|1046
4V9K|1|CA|G|1047
*
4V9K|1|CA|C|1210
4V9K|1|CA|U|1211
4V9K|1|CA|U|1212
4V9K|1|CA|A|1213
4V9K|1|CA|C|1214
4V9K|1|CA|G|1215

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CN

30S ribosomal protein S14 type Z

Chain CY

Elongation factor G