J3_4V9L_024

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4V9L|1|CA|U|1240, 4V9L|1|CA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9L_024 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1718

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V9L|1|CA|C|1237
4V9L|1|CA|A|1238
4V9L|1|CA|A|1239
4V9L|1|CA|U|1240
4V9L|1|CA|G|1241
*
4V9L|1|CA|C|1296
4V9L|1|CA|C|1297
4V9L|1|CA|C|1298
4V9L|1|CA|A|1299
4V9L|1|CA|G|1300
4V9L|1|CA|U|1301
4V9L|1|CA|U|1302
4V9L|1|CA|C|1303
*
4V9L|1|CA|G|1334
4V9L|1|CA|C|1335
4V9L|1|CA|C|1336
4V9L|1|CA|G|1337

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CM

30S ribosomal protein S13