J3_4V9L_026

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9L_026 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1862

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V9L|1|DA|C|698
4V9L|1|DA|A|699
4V9L|1|DA|G|700
*
4V9L|1|DA|C|732
4V9L|1|DA|G|733
4V9L|1|DA|A|734
4V9L|1|DA|A|735
4V9L|1|DA|C|736
*
4V9L|1|DA|G|760
4V9L|1|DA|A|761
4V9L|1|DA|U|762
4V9L|1|DA|G|763

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L2