J3_4V9L_034

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V9L|1|AA|C|48, 4V9L|1|AA|A|50, 4V9L|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9L_034 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1581

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V9L|1|AA|G|46
4V9L|1|AA|C|47
4V9L|1|AA|C|48
4V9L|1|AA|U|49
4V9L|1|AA|A|50
4V9L|1|AA|A|51
4V9L|1|AA|G|52
*
4V9L|1|AA|U|359
4V9L|1|AA|A|360
4V9L|1|AA|G|361
4V9L|1|AA|G|362
4V9L|1|AA|A|363
4V9L|1|AA|A|364
4V9L|1|AA|U|365
4V9L|1|AA|C|366
4V9L|1|AA|U|367
*
4V9L|1|AA|A|393
4V9L|1|AA|G|394
4V9L|1|AA|C|395

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16

Chain AY

Elongation factor G