J3_4V9L_061

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V9L|1|DA|U|504, 4V9L|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9L_061 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.259

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V9L|1|DA|G|30
4V9L|1|DA|C|31
*
4V9L|1|DA|G|474
4V9L|1|DA|U|475
4V9L|1|DA|G|476
4V9L|1|DA|A|477
4V9L|1|DA|A|478
4V9L|1|DA|A|479
4V9L|1|DA|A|480
4V9L|1|DA|G|481
4V9L|1|DA|A|482
4V9L|1|DA|A|483
4V9L|1|DA|C|484
*
4V9L|1|DA|G|496
4V9L|1|DA|A|497
4V9L|1|DA|G|498
4V9L|1|DA|U|499
4V9L|1|DA|G|500
4V9L|1|DA|A|501
4V9L|1|DA|A|502
4V9L|1|DA|A|503
4V9L|1|DA|U|504
4V9L|1|DA|A|505
4V9L|1|DA|G|506
4V9L|1|DA|A|507
4V9L|1|DA|G|508
4V9L|1|DA|C|509
4V9L|1|DA|C|510

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DU

50S ribosomal protein L20

Chain DW

50S ribosomal protein L22

Chain DY

50S ribosomal protein L24