J3_4V9N_017

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V9N|1|CA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9N_017 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0772

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V9N|1|CA|C|826
4V9N|1|CA|U|827
4V9N|1|CA|A|828
4V9N|1|CA|G|829
*
4V9N|1|CA|C|857
4V9N|1|CA|G|858
4V9N|1|CA|A|859
4V9N|1|CA|A|860
4V9N|1|CA|G|861
*
4V9N|1|CA|C|868
4V9N|1|CA|G|869
4V9N|1|CA|U|870
4V9N|1|CA|U|871
4V9N|1|CA|A|872
4V9N|1|CA|A|873
4V9N|1|CA|G|874

Current chains

Chain CA

16S rRNA (1504-MER)

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CH

30S ribosomal protein S8