3D structure

PDB id
4V9N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CUCG*CGAUAGCGCACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
4V9N|1|BA|C|34, 4V9N|1|BA|U|448, 4V9N|1|BA|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V9N_046 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.0757
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4V9N|1|BA|C|32
4V9N|1|BA|U|33
4V9N|1|BA|C|34
4V9N|1|BA|G|35
*
4V9N|1|BA|C|445
4V9N|1|BA|G|446
4V9N|1|BA|A|447
4V9N|1|BA|U|448
4V9N|1|BA|A|449
4V9N|1|BA|G|450
4V9N|1|BA|C|451
4V9N|1|BA|G|452
4V9N|1|BA|C|453
4V9N|1|BA|A|454
4V9N|1|BA|C|455
4V9N|1|BA|C|456
4V9N|1|BA|A|457
4V9N|1|BA|G|458
4V9N|1|BA|U|459
4V9N|1|BA|A|460
4V9N|1|BA|C|461
*
4V9N|1|BA|G|468
4V9N|1|BA|G|469
4V9N|1|BA|A|470
4V9N|1|BA|A|471
4V9N|1|BA|A|472
4V9N|1|BA|G|473

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B7
50S ribosomal protein L34
Chain BF
50S ribosomal protein L4
Chain BU
50S ribosomal protein L20
Chain BX
50S ribosomal protein L23

Coloring options:


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