3D structure

PDB id
4V9N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CC*GUGGAU*AAUCG
Length
13 nucleotides
Bulged bases
4V9N|1|DA|G|2833, 4V9N|1|DA|A|2835, 4V9N|1|DA|U|2884
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V9N_074 not in the Motif Atlas
Homologous match to J3_9DFE_019
Geometric discrepancy: 0.1652
The information below is about J3_9DFE_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76911.2
Basepair signature
cWW-tHS-F-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

4V9N|1|DA|C|2814
4V9N|1|DA|C|2815
*
4V9N|1|DA|G|2831
4V9N|1|DA|U|2832
4V9N|1|DA|G|2833
4V9N|1|DA|G|2834
4V9N|1|DA|A|2835
4V9N|1|DA|U|2836
*
4V9N|1|DA|A|2882
4V9N|1|DA|A|2883
4V9N|1|DA|U|2884
4V9N|1|DA|C|2885
4V9N|1|DA|G|2886

Current chains

Chain DA
23S ribosomal RNA

Nearby chains

Chain D5
50S ribosomal protein L32
Chain DE
50S ribosomal protein L3
Chain DR
50S ribosomal protein L17
Chain DT
50S ribosomal protein L19

Coloring options:


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