3D structure

PDB id
4V9N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CGG*CUAGA*UGACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V9N_080 not in the Motif Atlas
Homologous match to J3_4LFB_015
Geometric discrepancy: 0.0967
The information below is about J3_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V9N|1|CA|C|586
4V9N|1|CA|G|587
4V9N|1|CA|G|588
*
4V9N|1|CA|C|651
4V9N|1|CA|U|652
4V9N|1|CA|A|653
4V9N|1|CA|G|654
4V9N|1|CA|A|655
*
4V9N|1|CA|U|751
4V9N|1|CA|G|752
4V9N|1|CA|A|753
4V9N|1|CA|C|754
4V9N|1|CA|G|755

Current chains

Chain CA
16S rRNA (1504-MER)

Nearby chains

Chain CH
30S ribosomal protein S8
Chain CL
30S ribosomal protein S12
Chain CO
30S ribosomal protein S15
Chain CQ
30S ribosomal protein S17

Coloring options:


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