J3_4V9O_031

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V9O|1|DA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9O_031 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0813

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V9O|1|DA|C|826
4V9O|1|DA|U|827
4V9O|1|DA|U|828
4V9O|1|DA|G|829
*
4V9O|1|DA|C|857
4V9O|1|DA|G|858
4V9O|1|DA|G|859
4V9O|1|DA|A|860
4V9O|1|DA|G|861
*
4V9O|1|DA|C|868
4V9O|1|DA|G|869
4V9O|1|DA|U|870
4V9O|1|DA|U|871
4V9O|1|DA|A|872
4V9O|1|DA|A|873
4V9O|1|DA|G|874

Current chains

Chain DA

16S rRNA

Nearby chains

Chain DB

30S ribosomal protein S2

Chain DH

30S ribosomal protein S8

Chain DU

30S ribosomal protein S21