3D structure

PDB id
4V9P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Control of ribosomal subunit rotation by elongation factor G
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
4V9P|1|FA|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V9P_048 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.0686
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

4V9P|1|FA|C|826
4V9P|1|FA|U|827
4V9P|1|FA|U|828
4V9P|1|FA|G|829
*
4V9P|1|FA|C|857
4V9P|1|FA|G|858
4V9P|1|FA|G|859
4V9P|1|FA|A|860
4V9P|1|FA|G|861
*
4V9P|1|FA|C|868
4V9P|1|FA|G|869
4V9P|1|FA|U|870
4V9P|1|FA|U|871
4V9P|1|FA|A|872
4V9P|1|FA|A|873
4V9P|1|FA|G|874

Current chains

Chain FA
16S rRNA

Nearby chains

Chain FB
30S ribosomal protein S2
Chain FH
30S ribosomal protein S8
Chain FU
30S ribosomal protein S21

Coloring options:


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