3D structure

PDB id
4V9P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Control of ribosomal subunit rotation by elongation factor G
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CGG*CUUGA*UGACG
Length
13 nucleotides
Bulged bases
4V9P|1|HA|U|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V9P_139 not in the Motif Atlas
Homologous match to J3_5J7L_051
Geometric discrepancy: 0.0847
The information below is about J3_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V9P|1|HA|C|586
4V9P|1|HA|G|587
4V9P|1|HA|G|588
*
4V9P|1|HA|C|651
4V9P|1|HA|U|652
4V9P|1|HA|U|653
4V9P|1|HA|G|654
4V9P|1|HA|A|655
*
4V9P|1|HA|U|751
4V9P|1|HA|G|752
4V9P|1|HA|A|753
4V9P|1|HA|C|754
4V9P|1|HA|G|755

Current chains

Chain HA
16S rRNA

Nearby chains

Chain HH
30S ribosomal protein S8
Chain HL
30S ribosomal protein S12
Chain HO
30S ribosomal protein S15
Chain HQ
30S ribosomal protein S17

Coloring options:


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