J3_4V9Q_009

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V9Q|1|BA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9Q_009 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0693

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V9Q|1|BA|C|826
4V9Q|1|BA|U|827
4V9Q|1|BA|A|828
4V9Q|1|BA|G|829
*
4V9Q|1|BA|C|857
4V9Q|1|BA|G|858
4V9Q|1|BA|A|859
4V9Q|1|BA|A|860
4V9Q|1|BA|G|861
*
4V9Q|1|BA|C|868
4V9Q|1|BA|G|869
4V9Q|1|BA|U|870
4V9Q|1|BA|U|871
4V9Q|1|BA|A|872
4V9Q|1|BA|A|873
4V9Q|1|BA|G|874

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

30S ribosomal protein S2

Chain BE

30S ribosomal protein S5

Chain BH

30S ribosomal protein S8