J3_4V9R_062

3D structure

PDB id

4V9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V9R|1|DA|U|504, 4V9R|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9R_062 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0614

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V9R|1|DA|G|30
4V9R|1|DA|C|31
*
4V9R|1|DA|G|474
4V9R|1|DA|U|475
4V9R|1|DA|G|476
4V9R|1|DA|A|477
4V9R|1|DA|A|478
4V9R|1|DA|A|479
4V9R|1|DA|A|480
4V9R|1|DA|G|481
4V9R|1|DA|A|482
4V9R|1|DA|A|483
4V9R|1|DA|C|484
*
4V9R|1|DA|G|496
4V9R|1|DA|A|497
4V9R|1|DA|G|498
4V9R|1|DA|U|499
4V9R|1|DA|G|500
4V9R|1|DA|A|501
4V9R|1|DA|A|502
4V9R|1|DA|A|503
4V9R|1|DA|U|504
4V9R|1|DA|A|505
4V9R|1|DA|G|506
4V9R|1|DA|A|507
4V9R|1|DA|G|508
4V9R|1|DA|C|509
4V9R|1|DA|C|510

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DU

50S Ribosomal Protein L20

Chain DW

50S Ribosomal Protein L22

Chain DY

50S Ribosomal Protein L24