J3_4V9S_049

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

4V9S|1|BA|G|2843, 4V9S|1|BA|A|2845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9S_049 not in the Motif Atlas

Homologous match to J3_9DFE_019

Geometric discrepancy: 0.1548

The information below is about J3_9DFE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V9S|1|BA|C|2824
4V9S|1|BA|C|2825
*
4V9S|1|BA|G|2841
4V9S|1|BA|U|2842
4V9S|1|BA|G|2843
4V9S|1|BA|G|2844
4V9S|1|BA|A|2845
4V9S|1|BA|U|2846
*
4V9S|1|BA|A|2892
4V9S|1|BA|A|2893
4V9S|1|BA|U|2894
4V9S|1|BA|C|2895
4V9S|1|BA|G|2896

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B5

50S Ribosomal Protein L32

Chain BE

50S Ribosomal Protein L3

Chain BR

50S Ribosomal Protein L17