J3_4V9S_061

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V9S|1|DA|U|504, 4V9S|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9S_061 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.058

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V9S|1|DA|G|30
4V9S|1|DA|C|31
*
4V9S|1|DA|G|474
4V9S|1|DA|U|475
4V9S|1|DA|G|476
4V9S|1|DA|A|477
4V9S|1|DA|A|478
4V9S|1|DA|A|479
4V9S|1|DA|A|480
4V9S|1|DA|G|481
4V9S|1|DA|A|482
4V9S|1|DA|A|483
4V9S|1|DA|C|484
*
4V9S|1|DA|G|496
4V9S|1|DA|A|497
4V9S|1|DA|G|498
4V9S|1|DA|U|499
4V9S|1|DA|G|500
4V9S|1|DA|A|501
4V9S|1|DA|A|502
4V9S|1|DA|A|503
4V9S|1|DA|U|504
4V9S|1|DA|A|505
4V9S|1|DA|G|506
4V9S|1|DA|A|507
4V9S|1|DA|G|508
4V9S|1|DA|C|509
4V9S|1|DA|C|510

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DU

50S Ribosomal Protein L20

Chain DW

50S Ribosomal Protein L22

Chain DY

50S Ribosomal Protein L24