J3_4W21_003

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAG*CGUAG*UCCGAC

Length

15 nucleotides

Bulged bases

4W21|1|5|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W21_003 not in the Motif Atlas

Geometric match to J3_8P9A_050

Geometric discrepancy: 0.1897

The information below is about J3_8P9A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_21998.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4W21|1|5|G|1545
4W21|1|5|C|1546
4W21|1|5|A|1547
4W21|1|5|G|1548
*
4W21|1|5|C|1580
4W21|1|5|G|1581
4W21|1|5|U|1582
4W21|1|5|A|1583
4W21|1|5|G|1584
*
4W21|1|5|U|1609
4W21|1|5|C|1610
4W21|1|5|C|1611
4W21|1|5|G|1612
4W21|1|5|A|1613
4W21|1|5|C|1614

Current chains

Chain 5

28S ribosomal RNA

Nearby chains