J3_4W21_004

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W21_004 not in the Motif Atlas

Geometric match to J3_5J7L_040

Geometric discrepancy: 0.2412

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

4W21|1|5|G|1969
4W21|1|5|A|1970
4W21|1|5|C|1971
*
4W21|1|5|G|1995
4W21|1|5|C|1996
4W21|1|5|U|1997
4W21|1|5|A|1998
4W21|1|5|A|1999
4W21|1|5|G|2000
4W21|1|5|G|2001
*
4W21|1|5|C|2016
4W21|1|5|A|2017
4W21|1|5|C|2018

Current chains

Chain 5

28S ribosomal RNA

Nearby chains