J3_4W29_016

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4W29|1|BA|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W29_016 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.2305

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4W29|1|BA|C|2517
4W29|1|BA|A|2518
4W29|1|BA|U|2519
4W29|1|BA|C|2520
*
4W29|1|BA|G|2545
4W29|1|BA|U|2546
4W29|1|BA|U|2547
*
4W29|1|BA|A|2561
4W29|1|BA|U|2562
4W29|1|BA|U|2563
4W29|1|BA|A|2564
4W29|1|BA|A|2565
4W29|1|BA|A|2566
4W29|1|BA|G|2567

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BO

50S ribosomal protein L14