J3_4W29_039

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W29_039 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.2131

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4W29|1|AA|C|936
4W29|1|AA|A|937
4W29|1|AA|A|938
4W29|1|AA|G|939
*
4W29|1|AA|C|1344
4W29|1|AA|U|1345
4W29|1|AA|A|1346
4W29|1|AA|G|1347
4W29|1|AA|U|1348
4W29|1|AA|A|1349
4W29|1|AA|A|1350
*
4W29|1|AA|U|1372
4W29|1|AA|G|1373
4W29|1|AA|A|1374
4W29|1|AA|A|1375
4W29|1|AA|U|1376
4W29|1|AA|A|1377
4W29|1|AA|C|1378
4W29|1|AA|G|1379

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9