J3_4W29_055

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4W29|1|CA|C|48, 4W29|1|CA|A|50, 4W29|1|CA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W29_055 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.2227

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4W29|1|CA|G|46
4W29|1|CA|C|47
4W29|1|CA|C|48
4W29|1|CA|U|49
4W29|1|CA|A|50
4W29|1|CA|A|51
4W29|1|CA|G|52
*
4W29|1|CA|U|359
4W29|1|CA|A|360
4W29|1|CA|G|361
4W29|1|CA|G|362
4W29|1|CA|A|363
4W29|1|CA|A|364
4W29|1|CA|U|365
4W29|1|CA|C|366
4W29|1|CA|U|367
*
4W29|1|CA|A|393
4W29|1|CA|G|394
4W29|1|CA|C|395

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CP

30S ribosomal protein S16

Chain CY

Elongation factor G