J3_4W29_059

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W29_059 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.2304

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4W29|1|CA|U|943
4W29|1|CA|G|944
4W29|1|CA|G|945
4W29|1|CA|A|946
*
4W29|1|CA|U|1235
4W29|1|CA|A|1236
4W29|1|CA|C|1237
*
4W29|1|CA|G|1337
4W29|1|CA|G|1338
4W29|1|CA|A|1339
4W29|1|CA|A|1340

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CM

30S ribosomal protein S13

Chain CW

Transfer RNA; tRNA