J3_4W29_066

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W29_066 not in the Motif Atlas

Geometric match to J3_7A0S_001

Geometric discrepancy: 0.1681

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

4W29|1|DA|G|30
4W29|1|DA|C|31
*
4W29|1|DA|G|474
4W29|1|DA|U|475
4W29|1|DA|G|476
4W29|1|DA|A|477
4W29|1|DA|A|478
4W29|1|DA|A|479
4W29|1|DA|A|480
4W29|1|DA|G|481
*
4W29|1|DA|C|509
4W29|1|DA|C|510

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DU

50S ribosomal protein L20

Chain DY

50S ribosomal protein L24