J3_4W29_071

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4W29|1|DA|G|686, 4W29|1|DA|G|792, 4W29|1|DA|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W29_071 not in the Motif Atlas

Homologous match to J3_9DFE_007

Geometric discrepancy: 0.1688

The information below is about J3_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

4W29|1|DA|C|683
4W29|1|DA|G|684
4W29|1|DA|A|685
4W29|1|DA|G|686
4W29|1|DA|C|687
4W29|1|DA|U|688
4W29|1|DA|A|689
*
4W29|1|DA|U|773
4W29|1|DA|A|774
4W29|1|DA|G|775
*
4W29|1|DA|C|791
4W29|1|DA|G|792
4W29|1|DA|A|793
4W29|1|DA|G|794

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DD

50S ribosomal protein L2