J3_4W29_077

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCAUAG*CG*UCG

Length

11 nucleotides

Bulged bases

4W29|1|DB|U|14, 4W29|1|DB|C|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W29_077 not in the Motif Atlas

Homologous match to J3_9DFE_020

Geometric discrepancy: 0.4613

The information below is about J3_9DFE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_26985.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

7

Unit IDs

4W29|1|DB|C|11
4W29|1|DB|C|12
4W29|1|DB|A|13
4W29|1|DB|U|14
4W29|1|DB|A|15
4W29|1|DB|G|16
*
4W29|1|DB|C|68
4W29|1|DB|G|69
*
4W29|1|DB|U|107
4W29|1|DB|C|108
4W29|1|DB|G|109

Current chains

Chain DB

5S Ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L27

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DZ

50S ribosomal protein L25